Publications

Filipe EP Rodrigues, Sara GF Ferreira, Catarina Paiva-Silva, Andreia Figueiredo, Rita B Santos, Miguel Machuqueiro

In Silico Structural Analysis of the Grapevine Serine Protease VviSBT4.19 Involved in Defense against P. viticola

Journal of Agricultural and Food Chemistry

Gonçalo Laureano, Ana Cruz-Silva, José Moreira da Silva, Nuno Oliveira, Bernardo Duarte, Andreia Figueiredo

Uncovering terroir identity through elemental fingerprinting at an organic Douro Valley vineyard

Journal of Food Composition and Analysis

Eduardo Feijão, Irina A Duarte, Marcelo Pereira, Pedro Pascoal, Mónica Nunes, Susanne E Tanner, Ricardo Dias, Bernardo Duarte, Ana Rita Matos, Andreia Figueiredo, Vanessa F Fonseca

Gilthead sea bream gut bacteriome as a valuable tool for seafood provenance analysis

Applied and Environmental Microbiology

Bernardo Duarte, Eduardo Feijão, Ana Cruz-Silva, Pedro Pascoal, Mónica Nunes, Marcelo Pereira, Andreia Figueiredo, Ricardo P Dias, Susanne E Tanner, Vanessa F Fonseca

Reveal your microbes, and i’ll reveal your origins: geographical traceability via Scomber colias intestinal tract metagenomics

Animal Microbiome

Silenced cutters: mechanisms and effects of protease inhibition in plant-pathogen interactions

Silenced cutters: mechanisms and effects of protease inhibition in plant-pathogen interactions

Journal of Experimental Botany

Gonçalo Laureano, Ana Rita Matos, Andreia Figueiredo

Exploring the potential of lipid elicitors to enhance plant immunity

Progress in Lipids Research

João Proença Pereira, Ivan Bevilacqua, Rita B Santos, Serena Varotto, Walter Chitarra, Luca Nerva, Andreia Figueiredo

Epigenetic regulation and beyond in grapevine‐pathogen interactions: a biotechnological perspective

Physiologia Plantarum

Marisa Maia, Aziz Aziz, Philippe Jeandet, Andreia Figueiredo, Vincent Carré

Mass Spectrometry Imaging to map metabolites in plant-microbe interactions: grapevine as a case study

Oeno One

Catarina Gouveia, Rita B Santos, Catarina Paiva-Silva, Günther Buchholz, Rui Malhó, Andreia Figueiredo

The pathogenicity of Plasmopara viticola: a review of evolutionary dynamics, infection strategies and effector molecules

BMC Plant Biology

Catarina Gouveia, Rita B Santos, Selma Zukic, Thorsten Manthey, Rui Malhó, Andreia Figueiredo, Guenther Buchholz

Novel Plasmopara viticola isolate surpasses grapevine Rpv3.1 and Rpv3.2 resistance but not Rpv12

Journal of Plant Pathology

Joana Figueiredo, Rita B Santos, Andreia Figueiredo

Exploring Plant-Pathogen Interactions through Subcellular Proteomics: Insights and Challenges

Plant Pathogen Interaction

Gonçalo Laureano, Ana Rita Matos, Andreia Figueiredo

Eicosapentaenoic acid: New insights into an oomycete-driven elicitor to enhance grapevine immunity

Plant Physiology and Biochemistry

Bernardo Duarte, Ana Cruz-Silva, Eduardo Feijão, Marcelo Pereira, Mónica Nunes, Andreia Figueiredo, Ana Rita Matos, Ricardo Dias, Vanessa Fonseca, Carla Gameiro, Maria Teresa Cabrita

Marine microbial community taxonomic and functional indicators to volcanic and anthropogenic stressors in Deception Island, Antarctica

Environmental and Sustainability Indicators

Bernardo Duarte, João Albuquerque Carreiras, Ana Cruz-Silva, Enrique Mateos-Naranjo, Ignacio D Rodríguez-Llorente, Eloísa Pajuelo, Susana Redondo-Gómez, Jennifer Mesa-Marín, Andreia Figueiredo

Marine Plant Growth Promoting Bacteria (PGPB) inoculation technology: Testing the effectiveness of different application methods to improve tomato plants tolerance against acute heat wave stress

Plant Stress

María Gabriela Guevara, Miguel A Mazorra-Manzano, Dipak Gayen, Andreia Figueiredo

Plant proteolytic enzymes: contributions and challenges to improve food availability against climate change effects

Frontiers in Plant Science

Ana Rita Cavaco, Gonçalo Laureano, Bernardo Duarte, Jorge Marques da Silva, Carla Gameiro, Jorge Cunha, José Eiras Dias, Ana Rita Matos, Andreia Figueiredo

First assessment of leaf lipids and fatty acids as biomarkers of grapevine tolerance/susceptibility to Plasmopara viticola

Physiological and Molecular Plant Pathology

Gonçalo Laureano, Catarina Santos, Catarina Gouveia, Ana Rita Matos, Andreia Figueiredo

Grapevine-Associated Lipid Signalling Is Specifically Activated in an Rpv3 Background in Response to an Aggressive P. viticola Pathovar

Cells

Ana Cruz-Silva, Gonçalo Laureano, Marcelo Pereira, Ricardo Dias, José Moreira da Silva, Nuno Oliveira, Catarina Gouveia, Cristina Cruz, Margarida Gama-Carvalho, Fiammetta Alagna, Bernardo Duarte, Andreia Figueiredo

A new perspective for vineyard terroir identity: Looking for microbial indicator species by long read nanopore sequencing

Microorganisms

Rita B Santos, Andreia Figueiredo

Biotic and abiotic stress management in grapevine: recent advances and major breakthroughs

Agronomy

Ana Rita Cavaco, Gonçalo Laureano, Andreia Figueiredo, Ana Rita Matos

Fatty Acid Profiling of Grapevine Extracellular Compartment

Plant-Pathogen Interactions, Springer US

Marisa Maia, Andreia Figueiredo, Carlos Cordeiro, Marta Sousa Silva

FT‐ICR‐MS‐based metabolomics: A deep dive into plant metabolism

Mass spectrometry reviews

Dina Neves, Andreia Figueiredo, Marisa Maia, Endre Laczko, Maria Salomé Pais, Alfredo Cravador

A Metabolome Analysis and the Immunity of Phlomis purpurea against Phytophthora cinnamomi

Plants

Marisa Maia, Stefania Savoi, Andreia Figueiredo

Deciphering Plant-Pathogen Interactions Through Plant Metabolomics: From Technical Advances to Applied Research

Metabolomics: Recent Advances and Future Applications

João Carreiras, Ana Cruz-Silva, Bruno Fonseca, Ricardo C Carvalho, Jorge P Cunha, João Proença Pereira, Catarina Paiva-Silva, Soraia A. Santos, Rodrigo Janeiro Sequeira, Enrique Mateos-Naranjo, Ignacio D Rodríguez-Llorente, Eloísa Pajuelo, Susana Redondo-

Improving grapevine heat stress resilience with marine plant growth-promoting rhizobacteria consortia

Microorganisms

Bernardo Duarte, Juliana Melo, Renato Mamede, João Carreiras, Andreia Figueiredo, Vanessa F Fonseca, Miguel Leão de Sousa, Anabela B Silva

In the trail of “Maçã de Alcobaça” protected geographical indication (PGI): Multielement chemometrics as a security and anti-fraud tool to depict clones, cultivars and geographical origins and nutritional value

Journal of Food Composition and Analysis

Joana Figueiredo, Rita B Santos, Leonor Guerra-Guimarães, Céline C Leclercq, Jenny Renaut, Lisete Sousa, Andreia Figueiredo

Deep into the Apoplast: Grapevine and Plasmopara viticola Proteomes Reveal the Secret Beneath Host and Pathogen Communication at 6 h After Contact

Phytopathology

Bernardo Duarte, Andreia Figueiredo, Patrício Ramalhosa, João Canning-Clode, Isabel Caçador, Vanessa F Fonseca

Unravelling the Portuguese coastal and transitional waters’ microbial resistome as a biomarker of differential anthropogenic impact

Toxics

Marisa Maia, Andréa McCann, Cédric Malherbe, Johann Far, Jorge Cunha, José Eiras-Dias, Carlos Cordeiro, Gauthier Eppe, Loïc Quinton, Andreia Figueiredo, Edwin De Pauw, Marta Sousa Silva

Grapevine leaf MALDI-MS imaging reveals the localisation of a putatively identified sucrose metabolite associated to Plasmopara viticola development

Frontiers in Plant Science

H Chiango, N Jafarikouhini, D Pradhan, A Figueiredo, J Silva, TR Sinclair, James Holland

Drought resilience in CIMMYT maize lines adapted to Africa resulting from transpiration sensitivity to vapor pressure deficit and soil drying

Journal of Crop Improvement

Vanessa Azevedo, Loretta Daddiego, Maria Francesca Cardone, Giorgio Perrella, Lisete Sousa, Rita B Santos, Rui Malhó, Carlo Bergamini, Antonio Domenico Marsico, Andreia Figueiredo, Fiammetta Alagna

Transcriptomic and methylation analysis of susceptible and tolerant grapevine genotypes following Plasmopara viticola infection

Physiologia Plantarum

Bernardo Duarte, Eduardo Feijão, Ricardo Cruz de Carvalho, Irina A Duarte, Ana Patrícia Marques, Marisa Maia, Jasmine Hertzog, Ana Rita Matos, Maria Teresa Cabrita, Isabel Caçador, Andreia Figueiredo, Marta Sousa Silva, Carlos Cordeiro, Vanessa F Fonseca

Untargeted Metabolomics Reveals Antidepressant Effects in a Marine Photosynthetic Organism: The Diatom Phaeodactylum tricornutum as a Case Study

Biology

Bernardo Duarte, Eduardo Feijao, Márcia Vaz Pinto, Ana Rita Matos, Anabela Silva, Andreia Figueiredo, Vanessa F Fonseca, Patrick Reis-Santos, Isabel Cacador

Nutritional valuation and food safety of endemic mediterranean halophytes species cultivated in abandoned salt pans under a natural irrigation scheme Author links open overlay panel

Estuarine, Coastal and Shelf Science

Gonçalo Pereira, João Pereira, Rita B Santos, Andreia Figueiredo

Uncovering the role of DNA methyltransferases in grapevine–Plasmopara viticola interaction: from genome-wide characterization to global methylation patterns

Gene

Joana Figueiredo, Rita B Santos, Leonor Guerra-Guimarães, Céline C Leclercq, Jenny Renaut, Rui Malhó, Andreia Figueiredo

An in-planta comparative study of Plasmopara viticola proteome reveals different infection strategies towards susceptible and Rpv3-mediated resistance hosts

Scientific Reports

Laura Figueiredo, Rita B Santos, Andreia Figueiredo

The grapevine aspartic protease gene family: characterization and expression modulation in response to Plasmopara viticola

Journal of Plant Research

Andreia Figueiredo, Philippe Hugueney, Alessandra Durazzo

Recent advances in plant metabolomics: From metabolic pathways to health impact

Biology

G Laureano, AR Cavaco, AR Matos, A Figueiredo

Fatty acid desaturases: uncovering their involvement in grapevine defence against downy mildew

International Journal of Molecular Sciences

Andreia Figueiredo, Leonor Guerra-Guimarães

Isolation of apoplastic fluid from woody plant leaves: Grapevine and coffee as a case study

Shotgun Proteomics: Methods and Protocols

Joana Figueiredo, Ana Rita Cavaco, Leonor Guerra‐Guimarães, Céline Leclercq, Jenny Renaut, Jorge Cunha, José Eiras‐Dias, Carlos Cordeiro, Ana Rita Matos, Marta Sousa Silva, Andreia Figueiredo

An apoplastic fluid extraction method for the characterization of grapevine leaves proteome and metabolome from a single sample

Physiologia Plantarum

Marisa Maia, António EN Ferreira, Jorge Cunha, José Eiras-Dias, Carlos Cordeiro, Andreia Figueiredo, Marta Sousa Silva

Comparison of the chemical diversity of Vitis rotundifolia and Vitis vinifera cv.‘Cabernet Sauvignon’

Ciência e Técnica Vitivinícola

Rita B Santos, Andreia Figueiredo

Two sides of the same story in grapevine–pathogen interactions

Journal of Experimental Botany

Ana Rita Cavaco, Gonçalo Laureano, Jorge Cunha, José Eiras-Dias, Ana Rita Matos, Andreia Figueiredo

Fatty acid modulation and desaturase gene expression are differentially triggered in grapevine incompatible interaction with biotrophs and necrotrophs

Plant Physiology and Biochemistry

Ana Rita Cavaco, Ana Rita Matos, Andreia Figueiredo

Speaking the language of lipids: the cross-talk between plants and pathogens in defence and disease

Cellular and Molecular Life Sciences

Bernardo Duarte, Carla Gameiro, Ana Rita Matos, Andreia Figueiredo, Marta Sousa Silva, Carlos Cordeiro, Isabel Caçador, Patrick Reis-Santos, Vanessa Fonseca, Maria Teresa Cabrita

First screening of biocides, persistent organic pollutants, pharmaceutical and personal care products in Antarctic phytoplankton from Deception Island by FT-ICR-MS

Chemosphere

Marisa Maia, Ana Rita Cavaco, Gonçalo Laureano, Jorge Cunha, José Eiras-Dias, Ana Rita Matos, Bernardo Duarte, Andreia Figueiredo

More than just wine: The nutritional benefits of grapevine leaves

Foods

C Gouveia, S Zukic, T Manthey, R Malhó, G Buchholz, A Figueiredo

Subtilisin like proteins in the war between Grapevine and Plasmopara viticola isolates with contrasting aggressiveness

European Journal of Plant Pathology

Laura Figueiredo, Rita B Santos, Andreia Figueiredo

Defense and offense strategies: the role of aspartic proteases in plant–pathogen interactions

Biology

M Sebastiana, Albert Gargallo-Garriga, J Sardans, Míriam Pérez-Trujillo, Filipa Monteiro, Andreia Figueiredo, M Maia, R Nascimento, M Sousa Silva, AN Ferreira, C Cordeiro, AP Marques, L Sousa, R Malhó, Josep Peñuelas

Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree

Scientific reports

José P Queirós, Jaime A Ramos, Yves Cherel, Marco Franzitta, Bernardo Duarte, Rui Rosa, Filipa Monteiro, Andreia Figueiredo, Jan M Strugnell, Yuki Fukuda, Darren W Stevens, José C Xavier

Cephalopod fauna of the Pacific Southern Ocean using Antarctic toothfish (Dissostichus mawsoni) as biological samplers and fisheries bycatch specimens

Deep Sea Research Part I: Oceanographic Research Papers

A Cruz-Silva, A Figueiredo, M Sebastiana

First Insights into the Effect of Mycorrhizae on the Expression of Pathogen Effectors during the Infection of Grapevine with Plasmopara viticola

Sustainability

Manuela Teixeira, Eduardo Feijão, Luís Catarino, Ana Rita Matos, Andreia Figueiredo, Jorge Marques da Silva

Exploring local maize diversity for increased agricultural sustainability: New insights into drought stress response and recovery of Guinea-Bissau landraces

Sustainability

Hamilton Chiango, Andreia Figueiredo, Lisete Sousa, Thomas Sinclair, Jorge Marques da Silva

Assessing drought tolerance of traditional maize genotypes of Mozambique using chlorophyll fluorescence parameters

South African Journal of Botany

Daniela Ferreira, Joana Figueiredo, Gonçalo Laureano, André Machado, João Daniel Arrabaça, Bernardo Duarte, Andreia Figueiredo, Ana Rita Matos

Membrane remodelling and triacylglycerol accumulation in drought stress resistance: The case study of soybean phospholipases A

Plant Physiology and Biochemistry

Marisa Maia, António EN Ferreira, Rui Nascimento, Filipa Monteiro, Francisco Traquete, Ana P Marques, Jorge Cunha, José E Eiras-Dias, Carlos Cordeiro, Andreia Figueiredo, Marta Sousa Silva

Integrating metabolomics and targeted gene expression to uncover potential biomarkers of fungal/oomycetes-associated disease susceptibility in grapevine

Scientific Reports

Jorge Marques da Silva, Andreia Figueiredo, Jorge Cunha, José Eduardo Eiras-Dias, Sara Silva, Leonardo Vanneschi, Pedro Mariano

Using Rapid Chlorophyll Fluorescence Transients to Classify Vitis Genotypes

Plants

Joana Figueiredo, Jorge Cunha, José Eiras-Dias, Marta Sousa Silva, Andreia Figueiredo

Pathogen-related specificity of subtilase VVISBT4. 19 X1 in the Vitis vinifera defence response

Ciência e Técnica Vitivinícola

Rita B. Santos, Rui Nascimento, Ana V. Coelho, Andreia Figueiredo

Grapevine–downy mildew rendezvous: Proteome analysis of the first hours of an incompatible interaction

Plants

Hélia Cardoso, Andreia Figueiredo, Susana Serrazina, Rita Pires, Augusto Peixe

Genome Modification Approaches to Improve Performance, Quality, and Stress Tolerance of Important Mediterranean Fruit Species (Olea europaea L., Vitis vinifera L., and Quercus suber L.)

Advances in Plant Transgenics: Methods and Applications

Rui Nascimento, Marisa Maia, António EN Ferreira, Anabela B Silva, Ana Ponces Freire, Carlos Cordeiro, Marta Sousa Silva, Andreia Figueiredo

Early stage metabolic events associated with the establishment of Vitis vinifera–Plasmopara viticola compatible interaction

Plant Physiology and Biochemistry

Inês Diniz, Helena Azinheira, Andreia Figueiredo, E Gichuru, Helena Oliveira, Leonor Guerra-Guimarães, Maria do Céu Silva

Fungal penetration associated with recognition, signaling and defence-related genes and peroxidase activity during the resistance response of coffee to Colletotrichum kahawae

Physiological and Molecular Plant Pathology

Marisa Maia, António EN Ferreira, Gonçalo Laureano, Ana Patrícia Marques, Vukosava M Torres, Anabela Bernardes Silva, Ana Rita Matos, Carlos Cordeiro, Andreia Figueiredo, Marta Sousa Silva

Vitis vinifera ‘Pinot noir’leaves as a source of bioactive nutraceutical compounds

Food & function

Marisa Maia, Rebecca Höfle, Ana R Cavaco, António Ferreira, Carlos Cordeiro, Reinhard Töpfer, Anna Kicherer, Andreia Figueiredo, Marta Sousa Silva

Combining metabolomics and phenotyping to discover biomarkers of resistance to downy mildew

Free Radical Biology and Medicine

Gonçalo Laureano, Joana Figueiredo, Ana Rita Cavaco, Bernardo Duarte, Isabel Caçador, Rui Malhó, Marta Sousa Silva, Ana Rita Matos, Andreia Figueiredo

The interplay between membrane lipids and phospholipase A family members in grapevine resistance against Plasmopara viticola

Scientific reports

Joana Figueiredo, Gonçalo Laureano, Clemente da Silva, Marisa Maia, Marta Sousa Silva, Andreia Figueiredo

Accessing the link between subtilases and lipid signalling events in grapevine downy mildew resistance

Revista de Ciências Agrárias

Andreia Figueiredo, Joana Figueiredo, Marisa Maia, Ana Rita Cavaco, Gonçalo Laureano, Rui Nascimento, Clemente da Silva, Ana Rita Matos, Marta Sousa Silva

Subtilisin-like proteases and lipid signalling events play an important role in grapevine resistance to downy mildew: a systems biology approach

Revista de Ciências Agrárias

Patrícia Vidigal, Bernardo Duarte, Ana Rita Cavaco, Isabel Caçador, Andreia Figueiredo, Ana Rita Matos, Wanda Viegas, Filipa Monteiro

Preliminary diversity assessment of an undervalued tropical bean (Lablab purpureus (L.) Sweet) through fatty acid profiling

Plant Physiology and Biochemistry

J Figueiredo, C da Silva, A Folgado, R Abranches, MS Silva, A Figueiredo

Production and biochemical characterization of grapevine subtilase associated to Plasmopara viticola resistance

Free Radical Biology and Medicine

Ana Rita Cavaco, Marisa Maia, Gonçalo Laureano, Bernardo Duarte, Isabel Caçador, Marta Sousa Silva, Ana Rita Matos, Andreia Figueiredo

Identifying grapevine lipid biomarkers of resistance/susceptibility to Plasmopara viticola; towards a sustainable viticulture

Free Radical Biology and Medicine

Joana Figueiredo, Marta Sousa Silva, Andreia Figueiredo

Subtilisin‐like proteases in plant defence: the past, the present and beyond

Molecular plant pathology

Andreia Figueiredo, Joana Martins, Mónica Sebastiana, Ana Guerreiro, Anabela Silva, Ana Rita Matos, Filipa Monteiro, Maria Salomé Pais, Peter Roepstorff, Ana Varela Coelho

Specific adjustments in grapevine leaf proteome discriminating resistant and susceptible grapevine genotypes to Plasmopara viticola

Journal of proteomics

Inês Diniz, Andreia Figueiredo, Andreia Loureiro, Dora Batista, Helena Azinheira, Vitor Varzea, Ana Paula Pereira, Elijah Gichuru, Pilar Moncada, Leonor Guerra-Guimaraes, Helena Oliveira, Maria do Céu Silva

A first insight into the involvement of phytohormones pathways in coffee resistance and susceptibility to Colletotrichum kahawae

PloS one

Mónica Sebastiana, Joana Martins, Andreia Figueiredo, Filipa Monteiro, Jordi Sardans, Josep Peñuelas, Anabela Silva, Peter Roepstorff, Maria Salomé Pais, Ana Varela Coelho

Oak protein profile alterations upon root colonization by an ectomycorrhizal fungus

Mycorrhiza

Marisa Maia, Filipa Monteiro, Mónica Sebastiana, Ana Patrícia Marques, António E.N. Ferreira, Ana Ponces Freire, Carlos Cordeiro, Andreia Figueiredo, Marta Sousa Silva

Metabolite extraction for high-throughput FTICR-MS-based metabolomics of grapevine leaves

EuPA Open Proteomics

Joana Figueiredo, Gonçalo J. Costa, Marisa Maia, Octávio S. Paulo, Rui Malhó, Marta Sousa Silva and Andreia Figueiredo

Revisiting Vitis vinifera Subtilase Gene Family: A Possible Role in Grapevine Resistance against Plasmopara viticola

Frontiers in plant science

A Guerreiro, J Figueiredo, M Sousa Silva, A Figueiredo

Linking Jasmonic Acid to Grapevine Resistance against the Biotrophic Oomycete Plasmopara viticola

Frontiers in plant science